Artificial Intelligence in Medicine
○ Elsevier BV
Preprints posted in the last 7 days, ranked by how well they match Artificial Intelligence in Medicine's content profile, based on 17 papers previously published here. The average preprint has a 0.03% match score for this journal, so anything above that is already an above-average fit.
Roudbari, A.; Van Hentenryck, P.; Zandehshahvar, R.
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Longitudinal clinical cohorts contain heterogeneous progression patterns that are obscured by coarse diagnostic labels. Discovering these latent progression phenotypes requires models that distinguish patients not only by their outcomes, but also by how their clinical trajectories evolve. This paper proposes TRACE, an interpretable temporal phenotyping method that enables the learning of outcome-informed progression phenotypes from longitudinal trajectories. TRACE combines a trajectory- and outcome-aware contrastive objective with a probabilistic predictive phenotype layer, encouraging phenotypes to capture progression structure while remaining predictive of diagnostic state. A dual-attention mechanism further supports interpretation by identifying the visits and clinical variables most associated with each phenotype assignment. TRACE is evaluated on the Alzheimer's Disease Neuroimaging Initiative (ADNI) cohort for cognitive disease modeling, showing improved performance in both diagnostic prediction and phenotype discovery compared with other temporal phenotyping baselines. Finally, by allowing the number of phenotypes to exceed the diagnostic labels, TRACE enables discovering additional progression patterns that are not captured by labels defined a priori.
Pinheiro, A.; Cheng, H.; Karjadi, C.; Gifford, K.; Demissie, S.; Lunetta, K. L.; Liu, C.; Au, R.; Mohammed, S.
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INTRODUCTION: The digital clock drawing test (dCDT) is a cognitive screening tool capturing high-resolution pen-movement data. Existing approaches for classifying cognitive impairment from dCDTs rely on selected features or image-based methods. We propose representing dCDTs as structural networks to classify cognitive impairment and characterize spatial organization in clock drawings. METHODS: Weighted networks were constructed from 3,362 Framingham Heart Study participants, with and without cognitive impairment. Network representations were generated separately for command and copy conditions, with nodes representing pre-defined clock components (digits, hands, clock face) and edges capturing pairwise spatial relationships between components. Random forest models and graph convolutional networks were trained to predict cognitive impairment from the networks. Models were benchmarked against demographics-only and established summary feature baselines. RESULTS: Network-based models achieved AUC values comparable to the established summary feature baseline across command-only and copy-only conditions. Differences in spatial organization between the cognitively intact and impaired groups were greatest in the upper-right clock region, involving digits 1 and 2, the clock hands, and the surrounding clock face. Differences between the command and copy networks were larger among cognitively impaired participants. DISCUSSION: The proposed network representations provide an objective, scalable, and flexible framework for representing clock drawings for use in classification models. dCDT networks matched the predictive performance of established summary feature-based approaches and identified clock regions where spatial organization differed by cognitive status. After external validation, this approach has the potential to be incorporated within a clinical workflow to support automated and interpretable cognitive screening.
Bergman, H. I.; Liu, V.; Ali, S.
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Background: Ambient artificial-intelligence (AI) scribes are being deployed beyond medicine into allied-health practice, but comparative evidence mainly concerns physician documentation. Objective: To compare quality and transcript-grounded clinical-risk error burden of AI-generated and allied health professional notes from identical simulated consultations. Methods: Paired simulation across dietetics, physiotherapy, occupational therapy and speech and language therapy (five consultations each; 20 pairs; 40 notes). Heidi generated an unedited first-draft note and a professional documented each encounter. Professionals rated PDQI-9 quality. Professional and automated review identified unsupported statements and omissions; two language models graded clinical risk. Co-primary outcomes were PDQI-9 score and Critical+High error density. Results: Mean PDQI-9 scores were 38.45 and 35.05 for AI and professional notes (paired difference +3.40, 95% CI +0.01 to +6.79; Wilcoxon p=0.042; dz=0.47). The Bayesian estimate was +3.47 (94% equal-tailed credible interval +0.66 to +6.30; P[AI>professional]=0.989). Automated-reviewer all-error density was 3.35 vs 8.55 per note (professional-minus-AI difference 5.20, 95% CI 3.85 to 6.55); omission density was 1.45 vs 5.20 (difference 3.75, 2.80 to 4.65). Critical+High density was 0.35 vs 0.75 (difference 0.40, -0.10 to 1.00). The pooled quality result was driven principally by dietetics. Conclusions: AI-generated notes achieved modestly higher pooled quality and fewer transcript-grounded errors, chiefly omissions; serious-error evidence was inconclusive. Small discipline samples and incomplete ground truth preclude safety or discipline-wide superiority claims.
Mirza, L.; Bendayan, R.; Stewart, R.; Davis, K. A. S.
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Awareness of comorbidities in people with dementia is vital context for dementia research and clinical management. Natural Language Processing (NLP) applied to free text in the electronic health record (EHR) may help ascertain comorbidity presence. Our aim was to assess the validity of the MedCAT Comorbidity NLP app in a cohort of people with dementia. We used text from the EHR of South London and Maudsley NHS Mental Health Trust via Clinical Records Interactive Search (CRIS), linked to structured data from local primary care (Lambeth DataNet) and hospital admission data in a cohort of 3,543 people with dementia. We evaluated MedCAT Comorbidity, examining internal validity via manual review of text and external validity by cross-validation against linked primary care and hospital data; and comparison of the predictive value of comorbidity measures for mortality. Internal precision was highest for atrial fibrillation (100%) and lowest for diabetes (78%). Cross-validation with linked data varied substantially across conditions, with precision from 96% to 59% and recall 77% to 4%. The median number of comorbidities identified was two using any single source, or three when combined. MedCAT Comorbidity demonstrated predictive ability for mortality (HR 1.11 per condition), although the model fit was better using comorbidity from hospital admission data. In people with dementia, the MedCAT Comorbidity app showed high precision for most conditions during internal validation. The variability of precision and recall on external validity assessment partly reflects incomplete documentation. Results from the MedCAT comorbidity app can assist researchers in understanding comorbidity of cohorts, particularly when primary care or hospital data is not available. Our findings highlight the need to develop quality assurance protocols that include internal and external validity checks before deploying general data extraction apps for specific clinical subpopulations.
Li, Y.; Zhou, H.; Yeh, F.-Y.; Sun, Z.; Zheng, J.; Alzaidi, S.; Guan, H.; Li, J.; Seger, D. L.; Wang, L.; Li, M.; Li, X.; Chen, T.; Plasek, J. M.; Li, H.; Jiang, A.; Hong, P.; Li, F.; Zhang, W.; Cui, L.; Bates, D. W.; Zhou, L.; He, Y.; Tao, C.
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Biomedical artificial intelligence (AI) increasingly relies on heterogeneous data sources, yet differences in data structure, terminology, evidence quality, and provenance complicate their integration into reliable knowledge resources. Here, we develop an evidence-aware framework for processing and integrating heterogeneous pharmacovigilance data from FDA Adverse Event Reporting System (FAERS) reports, biomedical literature, clinical trials, and electronic health records in Mass General Brigham. The framework combines large language model (LLM)-based information extraction, ontology-driven semantic normalization, cross-source evidence assessment, statistical and machine learning-based prioritization, and ingredient-based adverse drug event (ADE) relationship inference to transform heterogeneous evidence into a structured and evidence-based knowledge resource. The constructed knowledge system contains 11,588 drug nodes, 44,843 ingredient nodes, 3,275 ADE nodes, 993 indication nodes, and more than 2.47 million relationships, with each drug-ADE relationship assigned a confidence score. We further developed a drug-level web interface for accessing the knowledge resource and validated its utility in downstream AI tasks. Specifically, incorporating the developed knowledge resource improved the comprehensiveness, relevance, and overall quality of LLM-based drug-specific ADE synthesis and improved the precision and F1 score of clinical ADE relation extraction. These results demonstrate that AI-assisted processing combined with evidence-aware curation can transform heterogeneous biomedical evidence into reusable, AI-ready knowledge with explicit provenance and evidence strength information. The framework provides a general strategy for integrating heterogeneous biomedical data to support reproducible knowledge construction and downstream biomedical AI applications.
Kagawa, E.; Kato, M.; Hidaka, T.; Kunita, E.; Hironobe, N.; Matsui, S.; Kobayashi, Y.; Uotani, Y.; Teramoto, T.; Yoshii, K.; Okumoto, T.; Tani, M.; Dote, K.
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Background: Artificial intelligence (AI) may improve electrocardiographic differentiation of Takotsubo syndrome from acute anterior ST-segment elevation myocardial infarction (STEMI), but its impact on human diagnostic performance, the added value of visual explanations, and differences by reader background and experience remain uncertain. Methods: Using 12-lead electrocardiogram (ECG) images from two hospitals, we developed and externally validated an ensemble of three deep learning models after self-supervised pretraining and fine-tuning. The diagnostic task used ECGs recorded within 14 days after symptom onset, regardless of reperfusion status. We conducted a four-phase reader study. Phases 1-3 compared unaided interpretation, a reference sheet, and additional AI assistance. In Phase 4, readers evaluated a new ECG set after randomization to reference-sheet support alone, with AI predictions, or with AI predictions plus gradient-weighted class activation mapping (Grad-CAM) heatmaps. Diagnostic correctness was analyzed using generalized linear mixed-effects models. Exploratory analyses examined differences by cardiologist status and experience. Results: Development and external-validation cohorts, including healthy controls, comprised 832 and 95 participants, respectively. For Takotsubo-STEMI discrimination, external-validation accuracy was 0.914, with areas under the receiver operating characteristic and precision-recall curves of 0.970 and 0.984. Seventy healthcare providers completed the reader study. The estimated probability of correct diagnosis increased from 0.632 without assistance to 0.864 with AI assistance (odds ratio [OR], 3.71; P<0.001). In randomized Phase 4, AI assistance improved accuracy vs reference-sheet support alone (OR, 4.28; 95% CI, 3.08-5.95; P<0.001), and Grad-CAM provided additional benefit (OR, 1.53; 95% CI, 1.04-2.25; P=0.033). Exploratory analyses showed greater improvement among less experienced readers; with AI assistance, non-cardiologists outperformed cardiologists. AI-assisted readers remained less accurate overall than the model alone. Conclusions: An ECG image-based ensemble differentiated Takotsubo syndrome from anterior STEMI and improved reader accuracy. Visual explanations provided additional benefit, while experience-related differences highlight the importance of effective human-AI interaction.
BOU ALI, M. N.; Mahmoud, M.
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Background. Real-world 12-lead electrocardiograms (ECGs) often have missing or corrupted leads. A deep-learning classifier can be prepared for this by random lead masking during training, or by injecting clinical knowledge, for example by pulling its attention towards the leads that guidelines use for each diagnosis. Whether this knowledge adds robustness beyond masking is unknown. Methods. Pre-registered comparison of three arms sharing one network (per-lead 1D-ResNet encoder and per-diagnosis attention over the 12 leads): standard training (M0); random whole-lead masking (M1); masking plus a Kullback-Leibler penalty pulling attention towards a fixed guideline-derived key-lead map (M2, guideline-based attention guidance). Six diagnoses; five seeds per arm. Development on PTB-XL (21,799 ECGs); single sealed evaluation on PTB-XL fold 10 (2,198 ECGs) and on CODE-15% (233,204 exams, external validation). Primary endpoint: AUROC difference M2 - M1, averaged over first-degree AV block, right and left bundle branch block and atrial fibrillation and over 1 to 6 lost (zeroed) leads, with a patient-level paired BCa bootstrap 95% confidence interval. Results. The guidance did not change robustness: {Delta}AUROC -0.0010 (95% CI -0.0033 to +0.0006), an interval entirely within the pre-specified +-0.02 margin; the result was unchanged with another bootstrap seed, other interval methods and leave-one-diagnosis-out analyses. Masking improved AUROC: M1 - M0 = +0.0134 (95% CI +0.0102 to +0.0172) when one key lead was lost, and the number of lost leads tolerated before AUROC fell by more than 0.02 rose from 7 (M0) to 10 (M1). M2 attention matched the map and M2 was non-inferior on intact ECGs, but its calibration slope was lower for all six diagnoses in both datasets. M2 lost slightly more when all key leads were lost together (-0.0067) and gained only when one to three leads remained (exploratory; AUROC 0.9408 vs 0.9210 with 11 leads lost). CODE-15% reproduced every pattern (primary -0.0007, 95% CI -0.0011 to -0.0003). Conclusions. Random lead masking suffices to make an ECG classifier robust to missing leads; adding guideline knowledge aligns attention with clinical criteria but adds no robustness and worsens calibration. Guideline-aligned attention should not be taken as evidence of robustness.
Gombolevskiy, V. A.; Sekacheva, M. I.; Sanikovich, V. D.; Bagmet, N. N.; Balaeva, D. A.; Nechaev, N. B.; Nesterov, A. I.; Bokov, A. A.; Panin, I. I.; Bespalov, I. R.; Gribakina, A. V.; Dylov, D. V.; Oseledets, I. V.
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Clinical records preserve patient findings and final recommendations but rarely capture how specialists select evidence, develop alternative interpretations, disagree, and converge on a management strategy. We describe a dataset derived from ten retrospectively selected, completed cases of histologically confirmed colorectal cancer. For each case, an administrator uploaded de-identified textual clinical records to an authenticated web-based annotation platform. A medical oncologist, surgical oncologist, and radiation oncologist, each with more than ten years of clinical experience, independently linked relevant source fragments to patient-specific interpretations and documented clinical problems, differential hypotheses, uncertainty, and diagnostic and treatment strategies. After the three records were locked, a large language model generated candidate questions for review by the tumour-board chair. The four physicians then discussed each case online; recordings were automatically transcribed and verified by two medical residents. The dataset comprises 30 source-linked specialist reasoning records, 10 verified case-level discussion transcripts, 10 final tumour-board decisions, and associated provenance and quality-control metadata. It supports research on evidence-grounded reasoning, cross-specialty disagreement, multidisciplinary decision-making, and multi-agent clinical decision support.
Shamohammadi, M.; Yarahmadi, D.; Naseri Rad, F.; Patel, I.; Yarahmadi, M.; Rashidi, A.; Yarahmadi, A.; Kordestani Moghadam, P.; Naghavi, N.
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Background: The C-reactive protein-albumin-lymphocyte (CALLY) index integrates systemic inflammation, nutritional status, and immune function. We evaluated its association with survival in primary lung malignancies. Methods: Embase, PubMed, Scopus, and Web of Science were searched from inception to 18 September 2026. Risk of bias was assessed using the Quality In Prognosis Studies tool. Hazard ratios (HRs) were synthesized using random-effects models with restricted maximum likelihood estimation and Hartung-Knapp adjustment. Sensitivity analyses, subgroup analyses, and meta-regression examined robustness and heterogeneity. Results: Eleven studies contributed 13 cohorts to the overall survival (OS) analysis and 8 cohorts from seven studies to a combined recurrence/progression-free survival (RFS/PFS) analysis. Lower CALLY was associated with poorer OS (HR 1.78, 95% CI 1.49-2.12; I2=71.6%) and poorer RFS/PFS (HR 1.60, 95% CI 1.40-1.84; I2=0%). Associations persisted in leave-one-out analyses. No statistically significant subgroup differences were detected. Funnel-plot asymmetry suggested small-study effects for OS and RFS/PFS. Seven studies had moderate and four had high overall risk of bias. The certainty of evidence was rated as low for both OS and RFS/PFS, primarily due to risk of bias, heterogeneity, and endpoint indirectness. Conclusion: Lower CALLY was associated with adverse survival outcomes in the current synthesis. Methodological limitations and variation in biomarker measurement and endpoint definitions restrict interpretation. Prospective validation using standardized measurements and clinically coherent outcomes is needed to establish incremental prognostic value and clinical utility. Keywords: CALLY index; lung cancer; prognosis; overall survival; systematic review; meta-analysis
Reiter, T.; Weber, O. M.; Weiss, i.; Kraus, N.; Kress, S.; Bauer, W. R.
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Patients with implantable cardioverter-defibrillators (ICDs) often are excluded from receiving CMR scans at 3.0T due to ICD-induced image artifacts. This work aims to transfer sequence protocols established for CMR imaging in the presence of ICDs at 1.5T to a first human application at 3.0T. All measurements were performed on a clinical 3T MRI scanner. Phantom measurements were used to establish and optimize wideband PSIR LGE imaging at 3.0T. Volunteer measurements with externally placed ICDs were used for optimization of CINE imaging and wideband PSIR imaging. Thirdly, patients with implanted ICD were examined with the optimized protocols. Human measurements showed that SA stacks obtained with spoiled GRE after contrast agent showed a markedly lower artifact burden than the conventional approach. For scar imaging, a wideband PSIR with a bandwidth of 3kHz and a frequency offset of +750Hz allowed a sufficient suppression of relevant artifacts in the majority of scans. No strong correlation between the image quality and the distance between the cardiac silhouette and the device was detected. The presented work shows the feasibility of clinical cardiac MRI at 3.0T including GRE-CINE and wideband PSIR-LGE for patients with ICDs.
Du, Y.; Liao, H.; Li, J.; He, Y.; Di, J.
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Deep learning (DL) applied to haematoxylin and eosin (H&E)-stained pathology images can predict microsatellite instability (MSI) in gastric cancer (GC). We evaluated its diagnostic accuracy and discriminative performance. PubMed, Embase, Cochrane Library and Web of Science were searched for studies applying DL to H&E images for MSI prediction in GC. The protocol was prospectively registered in PROSPERO (CRD420261503140). Risk of bias was assessed with QUADAS-2. Pooled sensitivity and specificity were estimated with a bivariate random-effects model, with subgroup analyses by validation strategy and data source; slide-level areas under the curve (AUCs) were pooled after logit transformation. Prespecified scenario analyses assessed robustness. Ten studies were included; seven independent datasets from six studies entered the primary synthesis. Pooled sensitivity, specificity and summary receiver operating characteristic AUC were 0.78 (95% CI 0.63-0.88), 0.85 (95% CI 0.77-0.90) and 0.89 (95% CI 0.86-0.91); nine studies contributed to the secondary AUC synthesis (pooled AUC 0.85, 95% CI 0.80-0.89). Hospital-derived cohorts showed numerically higher sensitivity (0.86) and diagnostic odds ratio (39.8) than TCGA-derived cohorts (0.71 and 11.5), but subgroup differences were limited by the small number of studies and substantial heterogeneity. DL models show good diagnostic accuracy for MSI prediction in GC, but clinical utility still requires confirmation in standardised multicentre, independent external and prospective studies.
Pozza, M.; Navarin, N.; Gabrielli, S.
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Background: Hospital readmission is a common and costly outcome in patients with chronic obstructive pulmonary disease (COPD). Multimodal deep learning models combining structured electronic health record (EHR) data with physiological, imaging, and textual data have been proposed to improve its prediction, but whether such fusion outperforms EHR data alone, once temporal-leakage safeguards are applied, remains unclear. Methods: Using a stratified MIMIC-IV cohort of COPD patients enriched to about 50% readmission (natural prevalence 18.1%; n=1,279; 895/192/192 training/validation/test), we predicted 30-day, all-cause readmission from four frozen, pre-trained encoders (electrocardiogram, chest radiograph, clinical notes, structured EHR). We audited and corrected temporal leakage in the admission-linkage pipeline of each modality, then compared three fusion architectures (naive concatenation, scalar gated fusion, EHR-anchored residual fusion) against unimodal baselines and an EHR-alone reference, using bootstrap significance testing, a missingness stress test, and calibration analysis with and without post-hoc recalibration. Results: The audit corrected three previously undetected temporal-alignment issues, affecting 5-9% of patients for clinical notes, 29-43% for chest radiographs, and 53-58% for ECG. After correction, every modality except EHR showed near-chance discrimination alone (ROC-AUC 0.46-0.53), confirmed with a non-linear adapter probe. No fusion architecture significantly outperformed the EHR-alone baseline (ROC-AUC 0.63); removing auxiliary modalities improved rather than degraded fusion performance under stress testing. The raw Brier score was lower for all three fusion architectures than for EHR-alone (about 0.24 versus 0.32), but this reflected overconfidence of the EHR-alone probe (calibration slope 0.12); after logistic recalibration fitted on the validation set, Brier scores were indistinguishable (EHR-alone 0.239; fusion 0.240-0.244; all paired bootstrap 95% CIs included zero). Conclusions: Structured EHR data alone matched the discrimination and, after recalibration, the calibration of more complex multimodal fusion for 30-day COPD readmission prediction. These findings highlight the importance of rigorous temporal-leakage auditing in multimodal clinical prediction research and suggest that reformulating this task around temporal proximity to the outcome, rather than refining the fusion mechanism further, may be more productive for future work.
Fan, R.; Azadnajafabad, S.; Reps, J. M.; Bowe, B.; Hofford, M. R.; Lim, K.-H.; Hripcsak, G.; Cao, Y.; Zhang, L.
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Objective: To determine how cohort versus nested case-control (NCC) design affects EHR-based prediction of a rare outcome. Materials and Methods: We compared two cohort and five NCC designs for predicting early-onset gastrointestinal cancer using L1-regularized logistic regression (LASSO), XGBoost, and multilayer perceptron (MLP). Models underwent nested five-fold cross-validation with model-specific hyperparameter tuning and temporal evaluation in a held-out prospective cohort representing intended deployment. Model discrimination was assessed using area under the receiver operating characteristic curve (AUROC) and area under the precision-recall curve (AUPRC). Model calibration was assessed using Brier scores and calibration plots before and after recalibration with isotonic regression. Feature-ranking similarity was quantified using rank-biased overlap. Results: The cohort development datasets included 256,854-415,529 patients, with 2-yr cumulative incidence of 0.12%-0.17%, compared with approximately 9% in the 1:10 matched NCC datasets. NCC designs generally produced higher internal discrimination, but temporal performance varied by algorithm and index-date definition. Cohort designs achieved the highest temporal AUPRC for LASSO (0.068), whereas diagnosis-anchored NCC achieved the highest temporal AUPRC for XGBoost (0.086) and MLP (0.070). Temporal AUPRC generally decreased as the required lead time before diagnosis increased. Raw predicted probabilities substantially overestimated observed risks in the temporal cohort. Isotonic recalibration improved probability scaling while largely preserving discrimination, although residual miscalibration remained. Cohort-based feature rankings were more consistent across algorithms, whereas NCC-based rankings depended more strongly on algorithm and index-date anchoring. Conclusion: Study design should be selected and evaluated according to the intended clinical prediction task and deployment setting.
Kitchen, C.; Kush, J.; Zirikly, A.; Belouali, A.; Nestadt, P.; Wilcox, H.; Kharrazi, H.
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Objective A diversity of approaches and cohorts have been published in research literature for suicide risk estimation, leading to some uncertainty around which factors and conditions are most strongly contributing to risk. Methods exist for weighting estimates by propensity score, removing simplifying the interpretation of model effects. Few studies have explored the use of these tools to assess when the effect of certain factors is uncertain or inconsistent. Method A mix of 1,001,737 suicide decedents and living patients were evaluated for suicide risk, relying on a subset of commonly identified factors: demographics, psychiatric conditions, substance use disorders, and social needs. Care utilization patterns were then assessed controlling for these factors in a hospital care setting. Four methods were considered for controlling multivariate confounding of odds predicting death by suicide: multivariate logistic regression, 1-to-1 sample matching, inverse propensity weighting (IPTW), and entropy balancing (EBAL). Results Test statistics showed suicide decedents were much more likely to have various psychiatric and substance use diagnoses, social needs and more likely to heightened care utilization across sampling intervals. Greater utilization was found close to date of death. Effect sizes after IPTW and EBAL weighting were also generally greater than would have been documented by regression alone. Conclusions Propensity weighting is a useful alternative to exploring nuanced effects, especially when the direction and strength of an association differ from traditional statistics. By weighting, the overall imbalance of cases remains consistent and effect terms might reflect more nuanced associations than regression or sample matching alone.
Asiaee, A.; Aryan, K.
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Objective: Case-finding models for underdiagnosed conditions are usually trained on diagnosis codes, which are missing from the records of many patients with a clinical diagnosis. We asked whether models trained on self-reported diagnoses rank uncoded self-reporters higher than models trained on later codes, and how a score fit only from released summary counts compares with a participant-level model. Methods: In the All of Us Research Program, we followed survey respondents with no qualifying diagnosis code by the survey date for later codes. For chronic fatigue, fibromyalgia, and endometriosis (participants recorded as female at birth), we fit a naive Bayes score with empirical-Bayes shrinkage, from released feature-by-label counts for the self-reported diagnosis and from exact counts inside the data enclave for a later code, and an elastic net on participant-level data for each label. In a random 20% validation split, we measured discrimination of self-report, of uncoded self-reporters (no qualifying code observed), and of later codes. Results: For chronic fatigue (149,860 respondents, including 7,770 self-reporters, 95% with no code observed), the summary-count score trained on self-report ranked uncoded self-reporters with an area under the receiver operating characteristic curve (AUROC) of 0.74 (95% CI, 0.72-0.75), against 0.67 (95% CI, 0.65-0.69) when trained on later codes. For later codes, the two scores were similar (0.69 vs 0.70). Fibromyalgia showed the same pattern (0.73 vs 0.64 and 0.74 vs 0.72). Elastic nets trained on self-report ranked uncoded self-reporters higher than the summary-count scores (0.80 vs 0.74 and 0.78 vs 0.73) but discriminated later codes less well than code-trained elastic nets. For endometriosis, the self-report score also ranked uncoded self-reporters above the code-trained score (0.61 vs 0.53), but discrimination was low and it did not discriminate later codes (0.50 vs 0.70). Conclusion: The choice of training label changes which patients a case-finding model ranks highly. For all 3 conditions, self-reported diagnoses were the more useful label for finding uncoded self-reporters. For chronic fatigue and fibromyalgia, the self-report score also discriminated later codes as well as the code-trained score. Independent clinical validation is needed before these models guide case finding.
Nahid, K.; Anam, M.; Saon, M. T. H.; Any, O. H.; Hassan, K. M. R.; Anwar, M. M.
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Large language models (LLMs) are increasingly consulted for health advice, but they can produce fluent statements that are false or unsupported, known as hallucinations, and this risk is poorly characterised in low-resource languages such as Bangla. We measured hallucinations of locally deployable open-weight LLMs in Bangla diabetes question answering and tested whether retrieval-augmented generation (RAG) grounded in Bangladeshs National Guideline on Diabetes Mellitus reduces them. Forty patient questions spanning six clinical sub-domains were each answered twice, under zero-shot prompting, by Qwen3.5-9B, TigerLLM-9B, Qwen3.6-35B-A3B and Gemma-4-26B-A4B, and by BanglaDiaRAG, which adds hybrid dense (BGE-M3) and sparse (BM25) retrieval from a physician-reviewed Bangla guideline knowledge base to Qwen3.5-9B. Two physicians rated the 400 de-identified responses by consensus for medical accuracy, completeness, safety, readability and reliability on a 0-1 scale, and responses with accuracy below 0.70 were classified as hallucinated. Hallucination rates were 2.5% for Gemma-4-26B-A4B, 3.8% for TigerLLM-9B, 22.5% for Qwen3.6-35B-A3B and 77.5% for Qwen3.5-9B. Guideline grounding lowered the rate of Qwen3.5-9B to 11.3% (difference -66.3 percentage points; 95% CI -76.3 to -55.0) and raised every criterion by 0.24 to 0.38 points (Holm-adjusted p < 0.001). BanglaDiaRAG outscored Qwen3.6-35B-A3B on all five criteria and matched or exceeded TigerLLM-9B, but it remained below Gemma-4-26B-A4B in safety, readability and reliability, and its residual errors were specific, confident and potentially harmful. Guideline grounding can turn a weak general-purpose model into a much safer Bangla diabetes assistant, but the choice of base model mattered as much as retrieval and no configuration was free of hallucination, so clinical oversight remains essential before patient-facing use.
Jin, Y.; Li, Y.; Wu, Z.; Shen, Y.; Zhang, J.; Gao, Y.; Su, D.; Li, L.; Si, Y.; Su, Y.; Yao, D.; Li, X.; Ha, W.; Shao, F.; Lu, Y.; Zhou, D.; Lan, Q.; Han, F.; Chen, X.
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Clinical records routinely document medical interventions but often omit the reasoning connecting patient-specific evidence to medical action. This limits the decision-relevant supervision available for training models for personalized care. Here we evaluate a data-augmentation approach that makes selected clinical decision relationships explicit in an 8-billion-parameter Qwen3 model, ChronIQ-DRx2. Using the same training cases and model architecture, expert-guided logic reconstruction was applied across four chronic diseases. On the held-out evaluation, the enhanced model had the highest plotted end-to-end task-completion rate among evaluated systems and higher plotted scores across diagnostic, medication and follow-up measures. The serious clinical error rates shown were 16.7% for the baseline and 12.5% for the enhanced model. In the human-AI evaluation, physician accuracy was 87.40% alone and 88.20% with AI assistance, while mean completion time was 0.959 and 0.780 min, respectively; medical-student accuracy was 62.71% and 74.80%, and mean completion time was 0.210 and 0.195 min. These results are descriptive point estimates; inferential comparisons are not reported here. Structured outputs may make recommendations easier to review, but rationale faithfulness, generalizability and effects on clinical safety require further evaluation.
Vermeulen, C.; van der Ent, H.; Maas, S. L.; Bos, E. M.; Cammel, K.; Maier, A. D.; Mathiesen, T.; Kranendonk, M. E. G.; Wesseling, P.; Seinstra, D.; Kooi, E.-J.; Stikker, B.; Dubbink, H. J.; Sie, M.; Eelkman Rooda, O. H. J.; Hoving, E. W.; Verburg, N.; Pages-Gallego, M.; Hench, J.; Frank, S.; Aldape, K.; Singh, O.; Quezado, M.; Abdullaev, Z.; Kester, L.; Tops, B. B. J.; de Ridder, J.
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DNA methylation-based classification is increasingly a cornerstone of CNS tumor diagnostics. Recently,nanopore sequencing enables very rapid methylation profiling to support surgical decision making. Time-constrained sequencing yields sparse methylation profiles, necessitating specialized classifiers for accurate predictions. All publicly available sparse-profile classifiers rely on a single reference set of only 2,801 samples published in 2018 and its accompanying classification system. Here we present Sturgeon V2, trained on nearly 10,000 methylation profiles assembled from a range of public repositories and collaborations. To harmonize differences in tumor class labels, we developed an iterative semi-supervised relabeling strategy with a two-tiered concordance filter. We demonstrate that this filtering is essential for optimal performance. Compared to Sturgeon V1, we further redesigned the classifier architecture to provide more stable, and consistent confidence estimates while accumulating sequencing data and we introduce an updated class system including new classes, such as meningioma subtypes, PATZ- fusion neuroepithelial tumors and PLAG1/2-amplified embryonal tumors. In a retrospective intraoperative cohort of 94 pediatric cases, Sturgeon V2 was confidently correct in 85 cases (Sturgeon V1: 78) with one confident misclassification, and in simulated sequencing runs (n=1880) reduced the error rate among confident calls from 7.1% to 2.8%, outperforming publicly available alternatives. Sturgeon V2 is the first openly available, locally executable classifier for sparse methylation profiles trained beyond the 2018 reference era.
Habib, G.; Thakur, S.; Shaban, M.; Ahmad, R.; Malik, I. A.
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The -Bonacci weighted sequence space {ell}(,) is introduced for [≥] 2, 1 [≤] < {infty}, and > 0). It is proved to be a Banach space which is isometrically isomorphic to {ell}, with an unconditional Schauder basis. The space is also reflexive and uniformly convex. Its strict inclusion chain, continuous dual, and asymptotic truncation estimate of order - / are also established. Based on this framework, Scaled 𝑚-BonacciNet is proposed as a lightweight CNN that rescales Fibonacci-Net channels using the dominant 𝑚-Bonacci root and employs depth wise separable convolutions. Tribonacci-Net achieved 96.09% accuracy and a 0.9581 macro F1-score on the 15-class Brain MRI dataset using 0.85 million parameters and 0.366 GFLOPs. Pentanacci-Net attained 95.87% accuracy on the 44-class dataset while reducing parameters and FLOPs by 47.10% and 44.48%, respectively. On the CKD ultrasound dataset, Hexanacci-Net achieved 83.75% accuracy and a 0.7941 macro F1-score, with corresponding reductions of 50.37% and 45.10%. These findings support dominant-root scaling as a structured approach to lightweight CNN design.
Chang, H.-H.; Chang, C.-K.; Tang, T.-Y.; Jhan, J.-H.; Dong, S.-W.; Juan, Y.-S.; Geng, J.-H.; Ou, H.-C.; Lee, H.-Y.; Li, C.-Y.; Yeh, H.-C.; Leong, M.-K.; Liu, C.-H.; Lee, Y.-C.; Huang, S.-P.
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Background and Objective: Adding belzutifan to adjuvant pembrolizumab improved disease-free survival (DFS) in LITESPARK-022, but its durability beyond the 1-year treatment is unknown. Methods: Following a registered plan, we reconstructed individual patient data from published Kaplan-Meier curves of ten phase 3 adjuvant renal cell carcinoma trials. Within each trial, we estimated restricted mean survival time differences ({Delta}RMST), hazard ratios (HRs) before and after planned treatment ended, and DFS differences. Key Findings and Limitations: In LITESPARK-022 (central review), the 24-month {Delta}RMST was 1.34 months (95% confidence interval 0.73-1.95), and the belzutifan arm remained ahead after month 12 ({Delta}RMST increment 0.74 months/yr, 0.32-1.19). The HR was 0.55 (0.43-0.71) before month 12 and 1.16 (0.87-1.54) afterwards (post/pre ratio 2.10); investigator assessment showed similar attenuation. Similar ratios occurred in KEYNOTE-564 at its first interim analysis (2.02), whose benefit persisted, and in SORCE and PROTECT (2.09, 2.59), whose benefit faded. From months 12 to 30 (post hoc), the DFS difference changed by -3.7 percentage points (-8.1 to 0.8) with central review and 0.6 (-4.0 to 5.0) with investigator assessment. Data were reconstructed, and follow-up was short. Conclusions and Clinical Implications: Relative hazard reductions with belzutifan were greater before month 12; durability of the absolute DFS advantage is uncertain and assessment-dependent, so single-HR projections should be avoided.